rs33362443 SNP Detail

Summary

• ID
  rs33362443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7632450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGGAGGG GACCTGGAAG
  AGGGGCAGGA AGAGAGGATT GTGAAACCTC CGAGATTTTC TAGACTGACT AGCTCCTGGC
  AGCAGAGCCC TGGGCAGGGA GGAAATGGAG TCTGGGGCTC CTCTGCAGCC TGATGCCCAC
  TTCCAGGAGC TCCAGATTAG GCTTGGCAAC GTTCTGTTTC ACAGTGCAGC TTCGGTTCCA
  Y
  CTGAGCTCAG GTTTTTAGTA AGAAAACCTC TTCTTCTCAG AGGCCAGCAT CTAGTCACTC
  CGTGAACCTG CTCAGAGGTT TCACCAATAA GGCCAAAGGC TACAATCTTG TTTCCTCTCG
  AGGAGTTGGC CAGACTGTGA CCTTTGAGTG ATGGAACTGT GTCTGGTCCC AGCGTCTCCT
  GAGGCCCACA TCCAGTCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46805131	NES10988080	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs33362443					SNP	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46805131	NES10988080	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7632450 () rs orientation: forward

Symbol	Name	Function Class
Rr394688	regulatory region 394688	within coordinates
Rr689657	regulatory region 689657	1803 bp distal
Tfe3	transcription factor E3	within coordinates
Tssr160431	transcription start site region 160431	1948 bp downstream
Tssr160432	transcription start site region 160432	1924 bp downstream
Tssr160433	transcription start site region 160433	1890 bp downstream
Tssr160434	transcription start site region 160434	1860 bp downstream
Tssr160435	transcription start site region 160435	1796 bp downstream
Tssr160436	transcription start site region 160436	1313 bp upstream
Tssr162816	transcription start site region 162816	400 bp upstream