rs33362531 SNP Detail

Summary

• ID
  rs33362531
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180828258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGGTTCTCC CTGAGCCTCC AATGAAGTCC AGCATCTTTG
  GTTATAGGAG AAGCATGCTG CACGAAGCTG GCTCATGATC CTCTCGGTCT GACAGAACAC
  W
  GGCTGCTGAG GAAGGGAAGG GTGGGCAGGG CATGCTGGCC AGCCCTAACT TGATTCCCCC
  CAAACATGAG TCTCCGACCA ACAATGGAAG CTACTAGAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45269248	mCV22912867	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33362531					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180828258 () rs orientation: forward

Symbol	Name	Function Class
C330003G01Rik	RIKEN cDNA C330003G01 gene	within coordinates
Cpgi12916	CpG island 12916	319 bp proximal
Gm75115	predicted gene, 75115	within coordinates
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor	782 bp upstream
Rr374383	regulatory region 374383	627 bp upstream
Rr572939	regulatory region 572939	292 bp proximal
Rr572940	regulatory region 572940	811 bp proximal
Rr572941	regulatory region 572941	882 bp proximal
Rr572942	regulatory region 572942	1238 bp proximal
Tssr22287	transcription start site region 22287	810 bp upstream
Tssr22288	transcription start site region 22288	910 bp upstream
Tssr22289	transcription start site region 22289	1044 bp upstream
Tssr22290	transcription start site region 22290	1132 bp upstream
Tssr22291	transcription start site region 22291	1171 bp upstream
Tssr22292	transcription start site region 22292	1314 bp upstream
Tssr22293	transcription start site region 22293	1412 bp upstream