rs33363952 SNP Detail

Summary

• ID
  rs33363952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7661662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTGAAAC AGGCCTTAGT
  CTGTTGCTGG GGGCAGTAAA TTGACAGGTG GGGCCAAACA CGTTCATGGA ATTAAATCCT
  CTGAGCCCTG AGTTTATTTG GTTCCTAAGT CACTCCTTTT ATTTAGTTCA AGTCTCCATT
  TGTATAGTTT TTGGCTGGTG CTATGGAGCC CCAGTGTATT CTGGAGCTTT AAGTAAAGTT
  Y
  TAATTGCTTA ACATGGATGG AAAAGTATTT GAACTGCTTC CATTTTCTTT TTCTTTCCTT
  CATCTGCCAT GAATCTGGGG TTCCACTTCT TCCAGGTAAT TAATCCTGGA TTGGCTAACT
  CTATCTCCTT ACTGATTTTA ATATCTTGGC TATTTCTAAA CCTTCTGGGC AGTTGGAAGT
  CCTGTGGGTT TTGTTTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46805296	NES10987314	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33363952					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46805296	NES10987314	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7661662 () rs orientation: forward

Symbol	Name	Function Class
Gripap1	GRIP1 associated protein 1	within coordinates
Rr4741	regulatory region 4741	1662 bp distal
Rr4742	regulatory region 4742	1939 bp proximal
Rr7807	regulatory region 7807	35 bp distal
Rr10055	regulatory region 10055	1739 bp proximal
Rr10781	regulatory region 10781	1721 bp distal
Tssr160440	transcription start site region 160440	1110 bp downstream
Tssr160441	transcription start site region 160441	1079 bp downstream
Tssr160442	transcription start site region 160442	1009 bp downstream