rs33364365 SNP Detail

Summary

• ID
  rs33364365
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110805306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCAACT GGGGCTACAC
  AGAGAAAGCC TGTCTCAAAG AACCAAAAAC CAAACCAAAC CAAAAAACAG TCTAGAGAGG
  AAAAAGTAAG GACTCTAATT AGATCCAGTA AGGACAAATG TCTTCAAGTA AGGATTGGTC
  AAGCTCATCT TCTCTCTCGA GTCGATGTCT TCCATCCACT GGGCCAGCCA GGCACTCACT
  Y
  CCAGTCTGCA TGCCAGACAC AGTGGTGTCT TACACACACA CACACACACA CACACACACA
  CACACACCGT CTTACCTGAC CCCTCAGCAT CCTCAGCATC TTCCCTGGAG ATTGCTGTCA
  CTACACCTGT TTAAGGATGA GAGCTGAGGG GGCTGAGAGG CGGCAGGGAC TCCTGAGGCT
  GTGGGTCTGC CTAGCTCCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss47289525	NES11400968	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs33364365					SNP	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47289525	NES11400968	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110805306 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5123	CpG island 5123	1518 bp proximal
Mok	MOK protein kinase	within coordinates
Rr387788	regulatory region 387788	567 bp downstream
Rr403503	regulatory region 403503	1962 bp upstream
Rr473004	regulatory region 473004	849 bp distal
Rr473005	regulatory region 473005	653 bp distal
Rr473006	regulatory region 473006	370 bp distal
Rr473007	regulatory region 473007	1420 bp proximal
Tssr117795	transcription start site region 117795	206 bp downstream
Tssr117796	transcription start site region 117796	1978 bp downstream