rs33364367 SNP Detail

Summary

• ID
  rs33364367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110805504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCAGTCT GCATGCCAGA
  CACAGTGGTG TCTTACACAC ACACACACAC ACACACACAC ACACACACAC CGTCTTACCT
  GACCCCTCAG CATCCTCAGC ATCTTCCCTG GAGATTGCTG TCACTACACC TGTTTAAGGA
  TGAGAGCTGA GGGGGCTGAG AGGCGGCAGG GACTCCTGAG GCTGTGGGTC TGCCTAGCTC
  Y
  GTGCCTGGCT GCAATGTCCT CCACCTCCAG AGCGGATGCT CTTAACTTTA CCCTGGGACA
  CCTTGCCACT CACTATGCAA ATGACTTACA AGGCAAAGGA GGAGGACAGG AAAACTGGCT
  AAACCTGGGT GTTACCAAAA CTTTGGCCAC AATCCACTTT CTGGAGGCCT AGGGTGGTGA
  TGGTGCACGC CTTTAATTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47289528	NES11400969	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33364367					SNP	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47289528	NES11400969	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110805504 () rs orientation: forward

Symbol	Name	Function Class
4921507G05Rik	RIKEN cDNA 4921507G05 gene	1959 bp upstream
Cpgi5123	CpG island 5123	1320 bp proximal
Mok	MOK protein kinase	within coordinates
Rr387788	regulatory region 387788	765 bp downstream
Rr403503	regulatory region 403503	1764 bp upstream
Rr473004	regulatory region 473004	1047 bp distal
Rr473005	regulatory region 473005	851 bp distal
Rr473006	regulatory region 473006	568 bp distal
Rr473007	regulatory region 473007	1222 bp proximal
Rr473008	regulatory region 473008	1847 bp proximal
Rr473009	regulatory region 473009	1977 bp proximal
Tssr115236	transcription start site region 115236	1951 bp upstream
Tssr117795	transcription start site region 117795	8 bp downstream
Tssr117796	transcription start site region 117796	1780 bp downstream
Tssr117797	transcription start site region 117797	1835 bp downstream