rs33364370 SNP Detail

Summary

• ID
  rs33364370
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110805518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGACACA GTGGTGTCTT
  ACACACACAC ACACACACAC ACACACACAC ACACACCGTC TTACCTGACC CCTCAGCATC
  CTCAGCATCT TCCCTGGAGA TTGCTGTCAC TACACCTGTT TAAGGATGAG AGCTGAGGGG
  GCTGAGAGGC GGCAGGGACT CCTGAGGCTG TGGGTCTGCC TAGCTCCGTG CCTGGCTGCA
  R
  TGTCCTCCAC CTCCAGAGCG GATGCTCTTA ACTTTACCCT GGGACACCTT GCCACTCACT
  ATGCAAATGA CTTACAAGGC AAAGGAGGAG GACAGGAAAA CTGGCTAAAC CTGGGTGTTA
  CCAAAACTTT GGCCACAATC CACTTTCTGG AGGCCTAGGG TGGTGATGGT GCACGCCTTT
  AATTCCAGCA CTTGAGAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47289531	NES11400970	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs33364370					SNP	A	A	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47289531	NES11400970	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110805518 () rs orientation: forward

Symbol	Name	Function Class
4921507G05Rik	RIKEN cDNA 4921507G05 gene	1945 bp upstream
Cpgi5123	CpG island 5123	1306 bp proximal
Mok	MOK protein kinase	within coordinates
Rr387788	regulatory region 387788	779 bp downstream
Rr403503	regulatory region 403503	1750 bp upstream
Rr473004	regulatory region 473004	1061 bp distal
Rr473005	regulatory region 473005	865 bp distal
Rr473006	regulatory region 473006	582 bp distal
Rr473007	regulatory region 473007	1208 bp proximal
Rr473008	regulatory region 473008	1833 bp proximal
Rr473009	regulatory region 473009	1963 bp proximal
Tssr115236	transcription start site region 115236	1937 bp upstream
Tssr117795	transcription start site region 117795	within coordinates
Tssr117796	transcription start site region 117796	1766 bp downstream
Tssr117797	transcription start site region 117797	1821 bp downstream