rs33364609 SNP Detail

Summary

• ID
  rs33364609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84926688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACT CCGTGGCAGT ATATGGAAAT
  R
  TTGGGAGTGG TTGGAGAAAA CTGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46266652	mCV24182199	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss145374871	ENSMUSSNP1110436	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss322748100	CHEV_8_86723958	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33364609					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84926688 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20681	CpG island 20681	1986 bp distal
Cpgi20682	CpG island 20682	1247 bp distal
Cpgi20683	CpG island 20683	83 bp proximal
Gm26887	predicted gene, 26887	1335 bp upstream
Gm37352	predicted gene, 37352	810 bp upstream
Gm56830	predicted gene, 56830	1474 bp upstream
Gm56836	predicted gene, 56836	861 bp downstream
Gm64014	predicted gene, 64014	within coordinates
Gm64130	predicted gene, 64130	1078 bp downstream
Gm65345	predicted gene, 65345	885 bp upstream
Rr186982	regulatory region 186982	887 bp distal
Rr186983	regulatory region 186983	within coordinates
Tssr2624	transcription start site region 2624	1273 bp downstream
Tssr78372	transcription start site region 78372	776 bp upstream
Tssr78373	transcription start site region 78373	801 bp upstream
Tssr78374	transcription start site region 78374	872 bp upstream
Tssr78375	transcription start site region 78375	1707 bp upstream
Tssr82079	transcription start site region 82079	1695 bp upstream
Tssr82080	transcription start site region 82080	1665 bp upstream
Tssr82081	transcription start site region 82081	1636 bp upstream
Tssr82082	transcription start site region 82082	558 bp downstream
Tssr82083	transcription start site region 82083	671 bp downstream
Tssr82084	transcription start site region 82084	1565 bp downstream
Tssr82085	transcription start site region 82085	1902 bp downstream
Tssr82086	transcription start site region 82086	1924 bp downstream
Tssr82087	transcription start site region 82087	1953 bp downstream