rs33364848 SNP Detail

Summary

• ID
  rs33364848
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173917618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCCCCAAGCC AGGGTAGCAA CGAGTGGGAT GCATGGTTCC AGAGACTGGG AGGCGACCAG
  AAACCCCAGC TCGAGGAAAC GTGGGCATAA CCTCAACACA AAGTACTTTT TGGGGGAGTG
  GGGCTGAGGG GTTGTCTCTA AGTTTAGGAA CCTTTCCCAC TTGGGCACAA CATTGTAGTG
  CCCAAGTGTA GATGCCTGAC CACTCTTTAT TGCCCACAGT AAGGCCAGCA AGGCCTAGCG
  CCCAAGCTTT TTTTATTATT ATTTTTTTCT TTTTTCCCTG GCCTGGTTGT TTTTCGGATA
  M
  TTTTTTTTTT TTCTCACAGT TTAAAGAAAA AAAATAAAAA AATAAAAAGG TAAGGCCATC
  TCAGCAGCGC CAGGCGCCTG CAGTGGAGCG TGCCTGGCCT GCAGAGGCAG ACTTCTTCCA
  CTTTTCCTCC GCCCCCGCGC AGGACTAGGC TCTGCAAGAG CCACGTTTCC ACATTTCTGC
  CTGCCTGACA ATCCTACTAG AAGTTTACAA TTGCCTGGAC CCCAGTGGTG GTCTTCGGCT
  CCAGGGCCAA GGTTTTGAAG CCGTTTTTTG GGGCCAGGAC GCCTGCCCCA GAGTCTGTAC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45269551	mCV24858258	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33364848					SNP	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173917618 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12851	CpG island 12851	521 bp distal
Cpgi12852	CpG island 12852	322 bp proximal
D130084N16Rik	RIKEN cDNA D130084N16 gene	1648 bp upstream
Gm75644	predicted gene, 75644	871 bp upstream
Rr397552	regulatory region 397552	1552 bp upstream
Rr572061	regulatory region 572061	882 bp distal
Rr572062	regulatory region 572062	381 bp distal
Rr572063	regulatory region 572063	421 bp proximal
Rr572064	regulatory region 572064	607 bp proximal
Rr572065	regulatory region 572065	1108 bp proximal
Stx16	syntaxin 16	483 bp upstream
Tssr22077	transcription start site region 22077	471 bp upstream
Tssr22078	transcription start site region 22078	1220 bp upstream