rs33365513 SNP Detail

Summary

• ID
  rs33365513
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7630009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGCACGA GTCTAAAGGA
  GTTAGGGGGA GGTCTCCGAT CTGCCGGGAG TGTGTGTGAA TAATTGAGCG AAGCAACTTG
  CTGGGCCCAA TCGGTTCACT GTTGCTACCC CGCTCAGCTG GCGTCTGTAC AGAAAGGCCG
  AGATAGTGGA AACCCCTCTT GTCTTATCCA ATGGGTGATA AAATGTGATG CGGCAGGGCA
  S
  ACTGGAAAGA TACAGTTCAC TTTTTAGGCG TGGGGGGTTG GGGGGAGGCC TAGAGCCTTA
  TATGGAAGCC CAGAGGAGGG TCTTGTTTCT GTTGCCACTC GCCCTAGCCT TGCAGCCAAG
  CCGGCCCTGC CCACTCCCTA CCCACACACC CCCTCTTCCT TTTATTTCGC CCTCCCAGCC
  GGTCTCTCAG TTCCCGGGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46805119	NES10988140	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33365513					SNP	C	C	C	C	C	C	G	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46805119	NES10988140	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7630009 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22579	CpG island 22579	697 bp distal
Rr394688	regulatory region 394688	515 bp upstream
Rr689655	regulatory region 689655	1065 bp distal
Rr689656	regulatory region 689656	within coordinates
Rr689657	regulatory region 689657	328 bp proximal
Tfe3	transcription factor E3	within coordinates
Tssr160423	transcription start site region 160423	1208 bp downstream
Tssr160424	transcription start site region 160424	1081 bp downstream
Tssr160425	transcription start site region 160425	1041 bp downstream
Tssr160426	transcription start site region 160426	961 bp downstream
Tssr160427	transcription start site region 160427	933 bp downstream
Tssr160428	transcription start site region 160428	872 bp downstream
Tssr160429	transcription start site region 160429	856 bp downstream
Tssr160430	transcription start site region 160430	181 bp upstream
Tssr160431	transcription start site region 160431	480 bp upstream
Tssr160432	transcription start site region 160432	506 bp upstream
Tssr160433	transcription start site region 160433	540 bp upstream
Tssr160434	transcription start site region 160434	553 bp upstream
Tssr160435	transcription start site region 160435	628 bp upstream
Tssr162815	transcription start site region 162815	within coordinates