rs33365857 SNP Detail

Summary

• ID
  rs33365857
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119065911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCTGCC TCCTTCTATC
  AGATGCTTGG ATTATAAGCA TGTATCACCA CACCCAGCTT TAAATATAGG TCTTTTTAAT
  ATCATGTACA CAGTGAATAT AATCATAAAC TTCTGGCAAT GTGGTATTGT GATAAGGTGG
  TACTCTCTTG TGGTAGTGTT CTCTTAGGTA TAAGCTATTT GGGAAGGCAG AAATCAAACT
  R
  TGACAAAGTT CTTTCTTCCC AGGAAATGCA CAATCATGTT TCTTCCCCAG CATACCATGA
  TGGGCATCAC TATGCCAGTG GCTGTGGAAC ATCAGAAGAT CCAGAGAGGG CCTGACACCC
  ACGTGTTTCC GCTCCCAGTG TCCGGAATGT GAGTGGCTGG AGGGTTTGCA ATCAGTGAAG
  GCAGGTCATC CTTGGCTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45269561	mCV24413860	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147326791	ENSMUSSNP2053246	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33365857					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119065911 () rs orientation: forward

Symbol	Name	Function Class
9130007G19Rik	RIKEN cDNA 9130007G19 gene	within coordinates
Cpgi12109	CpG island 12109	1336 bp proximal
Rr563445	regulatory region 563445	1159 bp proximal
Rr563446	regulatory region 563446	1625 bp proximal
Rr563447	regulatory region 563447	1835 bp proximal
Rr563448	regulatory region 563448	1949 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	1930 bp upstream
Tssr19609	transcription start site region 19609	1775 bp upstream
Tssr19610	transcription start site region 19610	1921 bp upstream
Tssr19611	transcription start site region 19611	1960 bp upstream