rs33366377 SNP Detail

Summary

• ID
  rs33366377
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110806991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCAGAAAGT AAGATAGGCG GCCCAGCGTC CCTCTCGAAC
  GCGGTTTAAG CCGCCGTCCC GCAGGGGCGG GGAGCCACCG TGTGAGCGCT CAGAGCCGAC
  S
  GCCAATGTCT TGAGATTTCA GATGCGATCC GACAAACGAA CGAACGAACG AACGAACGAA
  TGAGCGAGTG AATGAACGAA ATGACACAAC TCCTCAAACT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47289549	NES11400857	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33366377					SNP	G	G	G	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47289549	NES11400857	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110806991 () rs orientation: forward

Symbol	Name	Function Class
4921507G05Rik	RIKEN cDNA 4921507G05 gene	472 bp upstream
Cpgi5123	CpG island 5123	within coordinates
Gm26912	predicted gene, 26912	1719 bp downstream
Mok	MOK protein kinase	within coordinates
Rr403503	regulatory region 403503	277 bp upstream
Rr473007	regulatory region 473007	within coordinates
Rr473008	regulatory region 473008	360 bp proximal
Rr473009	regulatory region 473009	490 bp proximal
Rr473010	regulatory region 473010	1306 bp proximal
Rr473011	regulatory region 473011	1596 bp proximal
Tssr115236	transcription start site region 115236	464 bp upstream
Tssr117795	transcription start site region 117795	1461 bp upstream
Tssr117796	transcription start site region 117796	293 bp downstream
Tssr117797	transcription start site region 117797	348 bp downstream