rs33367131 SNP Detail

Summary

• ID
  rs33367131
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110818512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAATTTGA TATGACAGCT
  TTGGAAAGAG GCAGTGATAT AATTTCCACC AAAGGAGAGC AAACTTAATC AAAGTTAGCT
  TGATAGATTT GCTGGTGGTA GCTGGTGTGA TGGGGATGGT GAAAACCAGA TTCAAATAAT
  GAAAGAATGG ACCCCTTTGT GGCCTGGTGT GCAGGATAAT CTTCCAGCTT AAACTGTGCC
  M
  TGATAACCCA GAGGCCAAGC AGATAAGGAT TCTGCCCCCA AGGAGTCTGA GGACTAGGAG
  GAAGTGACAC AAGACCCAGA TGATAGCTGG TCAAGGACAA AAAGCTAGAG ATGTAACTAA
  CTGAATACAT TCAGAAAAAG GAAACGGTCT CTGGGAGCAC ACAGCTAATG CTGAAAAGCT
  AGTGTCTGAG CTAGATTTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47289564	NES11400245	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33367131					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47289564	NES11400245	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110818512 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5126	CpG island 5126	763 bp distal
Rr473015	regulatory region 473015	1789 bp distal
Rr473016	regulatory region 473016	1819 bp distal
Tssr115237	transcription start site region 115237	1776 bp downstream
Tssr115238	transcription start site region 115238	1753 bp downstream
Zfp839	zinc finger protein 839	within coordinates