rs33367442 SNP Detail

Summary

• ID
  rs33367442
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:70953349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTCTGCGCTA ATCTCCACCC CAGCTGGGCG GGCTGCTCTG TCCCCTTGAG GGCAGGAATG
  TGTGTCTTCC ATCAGAGATA GGACCCGTGG TAGCAGCAAC TGCTGCTGGC TGTTTCTGGA
  ATATTAAATG ACAGTAATCT ATCAGGCCTG GGTGAGTAGC TAACAGGGGT GGGGGCGTGG
  TCTGGAAAAC GCAGATAGGG TCATAGGAGC CACTGCAGCC TAGATTACAC CACTGGGTGT
  TCTGTCACTA GGCCATTCTC ACCAAGCAGT CCTCAGAACT GGGCGCACTG TTGCCAGCAT
  K
  TAATGCCAGC ATTTAATGCC AGCATTTAAT GCCAGCATTA GGGGAGGCAG AGGCAGAAGG
  ATCTCTCTGA GTTCAAGGCC ATCCTGAATC TACATAAAGA GCTCCAGGCC AGCCAGGGCT
  GCGCAGTAAA ACCTTGTCTC AAAAAACAAA GCATCTCTAG TGACCAGGCT TGCTCCACCC
  CCAGTGACCA CGGACCCCCC ACCCGACGTG CACGTGAGCC GCGTTGGGGG CCTGGAGGAC
  CAGCTGAGTG TGCGCTGGGT CTCACCACCA GCTCTCAAGG ATTTCCTCTT CCAAGCCAAG
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46267628	mCV22782748	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33367442					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70953349 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi20464	CpG island 20464			158 bp proximal
Cpgi20465	CpG island 20465			1592 bp proximal
Crlf1	cytokine receptor-like factor 1			Intron
				Noncoding-Transcript-Variant
Gm63784	predicted gene, 63784			within coordinates
Rr664779	regulatory region 664779			1247 bp proximal
Rr664780	regulatory region 664780			1376 bp proximal
Tssr77747	transcription start site region 77747			417 bp upstream