rs33368837 SNP Detail

Summary

• ID
  rs33368837
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115907485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGACGAT GGGCAGACAG
  AGACACTGAG AGAAGTAAAA ACCAACACCA TCAGGTGGCA CAAAGCTCAG TGAGACAAAG
  ATGGGAGTCT ATGGGCCCTG GCTGCTCCAG GACTTCACGA ATGGGCAAAC CCTGAGGGCT
  CCCCACATAT CTAGCTCTCC AAGGCTCACA AGGTATAACC TGAGCTGCTG TTGAGGACTT
  S
  TGGTGCCCAT GAGTTTGGAG CTGTGCCCCA AACTGGTGCC AAGCACCAAT ACCAATGGTT
  TCTGCTGAGA GCTGAGGCTT ATACTAAATG CCAAGGGCCA GGCCAAGAGT GGGGATAACC
  CAGAGGAAGA AGTCTCTGAC ATTAACACCT AAAAATGAAT TTCTTTGACC TCTACACCTG
  ACAACCATAA GGCTCTGTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46314169	mCV23304242	ABI	CRAMUS_MOUSE	f	SNP		C	G					G		G
ss47789501	NES11989387	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	G	G		C	G	G	G	G	G	G	G	C
ss137019996	ENSMUSSNP1532859	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33368837					SNP	C	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47789501	NES11989387	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115907485 () rs orientation: forward

Symbol	Name	Function Class
Gm18328	predicted gene, 18328	1538 bp downstream
Rr368885	regulatory region 368885	1132 bp downstream
Rr687945	regulatory region 687945	681 bp distal