rs33368842 SNP Detail

Summary

• ID
  rs33368842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:115908253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTCCTCC TCCTCCTCCT
  CTTCTTCTGA TTTCCATCTG TGTGAAACAA ATGACCCCAG CAAGTTGTCT TACGCAGTAA
  GTATTATGTG GCAGCAAAAC AGAAGTAAGT ATTATGAAGA AAAACAGAAT GAATGGAAGA
  AGAGAGTGGG TAGAGTAAAC TATTGACTGT AGAGCAATGG ACCAGGCAAG CCTGTGACAG
  Y
  TGAGCTGTTT TGCGGCTTAA GCATGTAAGA GAGAGAGTTT CTCAGGAAAG AATGATCCAC
  AGAGAAGGCC TTAAGGGCAG AGTGGGAGGA CTGCATCCAC AGGATATGCA AGGACCAGCA
  TGAAACTAAC TCACTGGGGC AAAGTGGGTG TTGGGTTGGT AGTATATGAT GCAATCAAGT
  AAGTTTTGGG AAGTTAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47789507	NES11989297	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33368842					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47789507	NES11989297	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:115908253 () rs orientation: forward

Symbol	Name	Function Class
Gm18328	predicted gene, 18328	770 bp downstream
Rr368885	regulatory region 368885	1900 bp downstream
Rr687945	regulatory region 687945	1449 bp distal