rs33369548 SNP Detail

Summary

• ID
  rs33369548
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:146697676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAG GGCTGCTCCA CCCTTGCCAG
  W
  CTCTCTGTCT TCGCCCCTCC CGGAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45270700	mCV22537333	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T	T
ss320546293	CHEV_2_146681492	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33369548					SNP	T	T	A	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:146697676 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12373	CpG island 12373	within coordinates
D2Dcr102	DNA Segment, Chr 2, Derry C. Roopenian 102	1460 bp proximal
Kiz	kizuna centrosomal protein	108 bp upstream
Rr397370	regulatory region 397370	626 bp upstream
Rr566738	regulatory region 566738	within coordinates
Rr566739	regulatory region 566739	68 bp proximal
Tssr20613	transcription start site region 20613	59 bp upstream
Tssr20614	transcription start site region 20614	105 bp upstream