rs33369601 SNP Detail

Summary

• ID
  rs33369601
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105513766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAT TCTCCCAGGT CTGACAACAG
  W
  CCAGTGGGCA GGTTCAAATT GTATT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45270334	mCV27580905	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss147168867	ENSMUSSNP5776562	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
ss320448075	CHEV_2_105523578	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33369601					SNP	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105513766 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12021	CpG island 12021	1733 bp distal
Cpgi12022	CpG island 12022	1005 bp distal
Pax6	paired box 6	within coordinates
Rr55347	regulatory region 55347	within coordinates
Rr55348	regulatory region 55348	1834 bp proximal
Rr366621	regulatory region 366621	568 bp downstream
Tssr588	transcription start site region 588	145 bp upstream
Tssr19262	transcription start site region 19262	1216 bp downstream
Tssr19263	transcription start site region 19263	930 bp downstream
Tssr19264	transcription start site region 19264	891 bp downstream
Tssr19265	transcription start site region 19265	734 bp downstream
Tssr19266	transcription start site region 19266	676 bp downstream
Tssr19267	transcription start site region 19267	444 bp downstream
Tssr19268	transcription start site region 19268	403 bp downstream