rs33369990 SNP Detail

Summary

• ID
  rs33369990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87755491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACTTCC CAGTTGAAAA
  AGCACCACCA TGCAAACCCT CAAACCGTGG AGAGCAATCA CTTTGTAAAA AGCAAGGCAA
  GATGAAACCT CAACTTCAGA AAGAAGCCTG CCTTCAGGAT AGTTTCCCCG TTCAGCAAGA
  ACATTTCGGT GCTAACAGCT ATATGCACCC ACTCGGAGAG TCCATTTTAA CCTCCTTTAC
  Y
  TAAGTTAGAC ATCCCTCACA CCTTTAAACA TATCTTTTAA TGAAGCCAGA GCTGGGCCCT
  CTTTCAGTCA TGGAAACCAG ACATTAAGCG GCCTTCTAAT TAGCACTAAC AAAGCTGACA
  CCCTTTCGAA CGAATGCCCA CTCGATGGGA ATACCAAACC AAACCAAACC TCAGATTTCT
  GTTTCTATTA TCCTTGCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39527591	mCV24502121	ABI	CRAMUS_MOUSE	f	SNP		T	C	C
ss146179914	ENSMUSSNP3970423	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33369990					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87755491 () rs orientation: forward

Symbol	Name	Function Class
Calm2	calmodulin 2	1128 bp upstream
Cpgi9626	CpG island 9626	542 bp distal
Gm65472	predicted gene, 65472	within coordinates
Rr370330	regulatory region 370330	1142 bp downstream
Rr370331	regulatory region 370331	822 bp downstream
Rr393074	regulatory region 393074	1593 bp downstream
Rr532695	regulatory region 532695	1450 bp distal
Rr532696	regulatory region 532696	1218 bp distal
Rr532697	regulatory region 532697	638 bp distal
Tssr146185	transcription start site region 146185	1913 bp downstream
Tssr146186	transcription start site region 146186	1383 bp downstream
Tssr146187	transcription start site region 146187	825 bp downstream
Tssr149773	transcription start site region 149773	1194 bp upstream