rs33370327 SNP Detail

Summary

• ID
  rs33370327
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:75313815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGGGAAAGC GCTAAGAAAA AAGGGAGGTG TGAAGGGCTC
  GGCTGGAGGA GGTCGGACCT CGGATGCCGG CCGGGCACAC TCGGCGCCAG TCGAGCCCTC
  R
  TAATTACTGG ACGGCGCTGC TGTTGGAAAC ATCTGGGGCC AGACTTGAGC GCGGCGGTGG
  CGGCTGCAGC ACCGTGAGAG GGGCGCGCGG GCGAGGGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45770899	mCV22844133	ABI	CRAMUS_MOUSE	f	SNP		G					A
ss51163940	NES13839633	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	A	A	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33370327					SNP	G	G	G	A	G	A	A	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51163940	NES13839633	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:75313815 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15981	CpG island 15981	1470 bp distal
Cpgi15982	CpG island 15982	within coordinates
D5Mit201	DNA segment, Chr 5, Massachusetts Institute of Technology 201	1533 bp proximal
Gm42802	predicted gene 42802	within coordinates
Gm42803	predicted gene 42803	1731 bp downstream
Pdgfra	platelet derived growth factor receptor, alpha polypeptide	within coordinates
Rr125352	regulatory region 125352	within coordinates
Tssr46684	transcription start site region 46684	1754 bp downstream
Tssr46685	transcription start site region 46685	968 bp downstream
Tssr46686	transcription start site region 46686	857 bp downstream
Tssr46687	transcription start site region 46687	787 bp downstream
Tssr46688	transcription start site region 46688	368 bp upstream
Tssr46689	transcription start site region 46689	427 bp upstream