rs33370907 SNP Detail

Summary

• ID
  rs33370907
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46043823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTCATCTCT GCTACTTCAG GTGACACAGA ACAGGGACAC
  TATGTCCTAG ATGAAATCAG ATTTCATGGG CTTTAGACGG TTCTATTTCA TTTTAAACAT
  Y
  AAACAGTTGG ATACCCCAGC TCCTCACATG GAACACGCTG GAAGCCCTCT CTTAACTACA
  TACATGAAGG ACCAGGACAG AAACCAGCTC TAATACAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39527698	mCV22670725	ABI	CRAMUS_MOUSE	f	SNP	C	C						T		C
ss60259546	NES15752859	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T	C	T	C		T	T	T	T		C
ss145695585	ENSMUSSNP5859233	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								C
ss325403975	CHEV_17_45869846	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33370907					SNP	C	C	C	C	C	C	C	T	T	C	T	C	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259546	NES15752859	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46043823 () rs orientation: forward

Symbol	Name	Function Class
1600014C23Rik	RIKEN cDNA 1600014C23 gene	within coordinates
BE949265	cDNA sequence BE949265	679 bp downstream
Cpgi9207	CpG island 9207	611 bp proximal
F630040K05Rik	RIKEN cDNA F630040K05 gene	1609 bp upstream
Rr331489	regulatory region 331489	1023 bp distal
Rr339882	regulatory region 339882	377 bp proximal
Tssr144810	transcription start site region 144810	1688 bp upstream
Tssr148277	transcription start site region 148277	946 bp downstream