rs33371458 SNP Detail

Summary

• ID
  rs33371458
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163442988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAAGATG TCGGAGTGAT
  GTGGGGAAGA CCATGGACCA AATAATACCA GTAGCTCAGT AGCTTCTGCA AGTTGGAAAA
  GAGAACCAGT ACCCAGAGAG ACAGCAGCCT TCCCAGCTCC CCGGTGTCTT TAGCAAAGCA
  ACAAAATACA TTTGTGTTAT TTGAAGTCAC TATGTAGTAA TTTGTTATAA ATGGAACAGG
  R
  AACTAACACT TAGATTTGGG CGGGGGGGGG GCGCGGACGG GGGACAGGAC ACCTATTTAA
  ATGTGAGTTT CTGAGAAACA AACATTTCTA AAGTATGTGT CCCAAATGTT ACATAAGGAA
  CCTAGTCTTA AAAATAGACC TTTGTTTATC TGAAATTCAA ATTTAACTGA GAGTTCTATA
  TTTTATTTGG CAGCCTAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss45270265	mCV23585546	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss148206375	ENSMUSSNP3800021	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs33371458					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163442988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12638	CpG island 12638	930 bp proximal
Rr397464	regulatory region 397464	1471 bp upstream
Rr569431	regulatory region 569431	1361 bp distal
Rr569432	regulatory region 569432	1618 bp distal
Rr569433	regulatory region 569433	within coordinates
Rr569434	regulatory region 569434	756 bp proximal
Rr569435	regulatory region 569435	944 bp proximal
Rr569436	regulatory region 569436	1140 bp proximal
Rr569437	regulatory region 569437	1265 bp proximal
Tssr21475	transcription start site region 21475	1226 bp upstream
Tssr21476	transcription start site region 21476	1263 bp upstream
Ttpal	tocopherol (alpha) transfer protein-like	1246 bp upstream