rs33374047 SNP Detail

Summary

• ID
  rs33374047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113876234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGT TTTTGATCCT AGGCATATAG
  Y
  TTTGTAAAGT AGAAACAAAA ATCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45270577	mCV22515894	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss147245666	ENSMUSSNP4353648	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss320462290	CHEV_2_113871489	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33374047					SNP	C	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113876234 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	1529 bp downstream
Rr562815	regulatory region 562815	43 bp distal
Rr562816	regulatory region 562816	452 bp proximal
Tssr600	transcription start site region 600	1809 bp downstream
Tssr601	transcription start site region 601	1819 bp downstream
Tssr19429	transcription start site region 19429	1531 bp upstream
Tssr19430	transcription start site region 19430	1626 bp upstream
Tssr19431	transcription start site region 19431	1706 bp upstream
Tssr19432	transcription start site region 19432	1802 bp upstream
Tssr25660	transcription start site region 25660	1558 bp downstream
Tssr25661	transcription start site region 25661	1575 bp downstream
Tssr25662	transcription start site region 25662	1632 bp downstream
Tssr25663	transcription start site region 25663	1695 bp downstream
Tssr25664	transcription start site region 25664	1725 bp downstream
Tssr25665	transcription start site region 25665	1833 bp downstream