rs33374720 SNP Detail

Summary

• ID
  rs33374720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132356553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTGAAAT TATTTGGCTG
  TTCAACCCAT GCAGATCTGC ATGTGTGACA AGAAATAAAA ATACCCAATA GCCGGAGCTG
  CTTCCCTGGT CTCCTTCTGC AGGAAGCATG AGTTTTTGTG TGCTGTGGGG CTCTGTGCCA
  GCACAGCCTC ACAGCACATG GGGCCCGAGT ACAGCTGGTC TTGGAGCTCG GCGACTTGGA
  Y
  ACAGGAGTAT ATAGTCTCCC TCAGTAGCAT CTCCACCTTT TGTCACTAAC TGAAGCTGTT
  TGGATCTGAG TGTTCTGTGC TCCCAATTGC TGCTGCCCTA ATGTCCTGGC TCAGGGCACG
  TTTCAAGCGA CTCATTTTTC TTTGCCAACA TCACCCAAGC CAGTGGCTCT GTTCTCACAT
  CCGTCTCTAC TCAGCACATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45271108	mCV22302767	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss147620875	ENSMUSSNP4012358	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33374720					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132356553 () rs orientation: forward

Symbol	Name	Function Class
1700026D11Rik	RIKEN cDNA 1700026D11 gene	within coordinates
Rr367319	regulatory region 367319	1748 bp downstream
Rr367320	regulatory region 367320	442 bp downstream
Rr397333	regulatory region 397333	1788 bp upstream
Tssr26475	transcription start site region 26475	714 bp upstream