rs33375380 SNP Detail

Summary

• ID
  rs33375380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:116071305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGGTTTT AGCTTGCTGC
  AGCTACTTGG CAATGCTTTG ACATGAGACT CTTGGTAGGA ATGTTAAGGA CAGCCTCTTG
  GTGCCATTCT CCTGCTTTGC CTGTGGTTAG GAATGTGGTT GGTCTCAAAT CCTGAGAATT
  AGACTATTTC ACAAAGCTCC TTGGAAATGA AGGGGAGTCA GGTGGAGGTA GAATGTGAAG
  R
  CTGCTAGACG TTCCCAGAAC CTTCCCAGAA AGAGCTCATG CCTTCGGAAT GTGCAGCTGA
  TGAAGGTCAG AGGGAACAGT TCACAGACAC CAGAGGGCTG TAGCCTCACC CCTGTCTCTG
  TATGTTTCTT TCCACAGCTG TCTCATATAC CACTGCTCAC AGCTCAGACT TGATCTCCAG
  ACACACCCAT CTGGAGTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47790391	NES11982888	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33375380					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47790391	NES11982888	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:116071305 () rs orientation: forward

Symbol	Name	Function Class
Gm31410	predicted gene, 31410	within coordinates
Rr366687	regulatory region 366687	within coordinates
Rr383972	regulatory region 383972	1362 bp downstream
Rr688005	regulatory region 688005	within coordinates
Rr688006	regulatory region 688006	1233 bp proximal