rs33375555 SNP Detail

Summary

• ID
  rs33375555
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33855188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGGTTTTGA GATTGGGTCT CCACTCAGTT ACCAAACCTG
  AATTGAATCT GACATCCACC AGCCATATTC TCAACCAGTA CCTGGGATTA TAGGCGTGGC
  K
  TGGCTTCTTT CATATTTCTA CCTGACTCCA TTCACCAAGA TTCTGGAAAC TATCCACTTG
  AGACTCCTAT AAAAGCAGAC TCGTCTCTAG GAACTGTGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss39528542	mCV24098506	ABI	CRAMUS_MOUSE	f	SNP	G	G	T					G		T
ss62686889	NES17316579	PERLEGEN	MM_PANEL2	f	SNP			T	T	T	G	T		T	T	G		T	G	T	T
ss145493288	ENSMUSSNP3010532	ENSEMBL	ENSEMBL_Sanger	f	SNP			T							T
ss325366930	CHEV_17_33773159	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs33375555					SNP	G	G	T	T	T	G	T	G	T	T	G	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62686889	NES17316579	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33855188 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	1842 bp upstream
Tssr143785	transcription start site region 143785	1586 bp upstream
Tssr143786	transcription start site region 143786	1607 bp upstream
Tssr143787	transcription start site region 143787	1875 bp upstream
Tssr143788	transcription start site region 143788	1906 bp upstream
Tssr143789	transcription start site region 143789	1916 bp upstream