rs33375571 SNP Detail

Summary

• ID
  rs33375571
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85414989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGC GGACTGGATT AAGAGTGTCT
  R
  CTGGCCGGGC AATGGTGGCA CACAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46268129	mCV24193285	ABI	CRAMUS_MOUSE	f	SNP		G					A		G
ss60644225	NES16269497	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	G	G	G		A	G	G	A		G
ss145392080	ENSMUSSNP2583845	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss322751349	CHEV_8_87212259	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33375571					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60644225	NES16269497	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85414989 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20705	CpG island 20705	324 bp distal
Cpgi20706	CpG island 20706	1121 bp proximal
Nacc1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	461 bp upstream
Rr666573	regulatory region 666573	469 bp distal
Rr666574	regulatory region 666574	1097 bp distal
Rr666575	regulatory region 666575	125 bp distal
Rr666576	regulatory region 666576	335 bp proximal
Rr666577	regulatory region 666577	862 bp proximal
Rr666578	regulatory region 666578	1432 bp proximal
Trmt1	tRNA methyltransferase 1	within coordinates
Tssr78430	transcription start site region 78430	909 bp upstream
Tssr78431	transcription start site region 78431	948 bp upstream
Tssr82111	transcription start site region 82111	1261 bp upstream
Tssr82112	transcription start site region 82112	789 bp upstream
Tssr82113	transcription start site region 82113	741 bp upstream
Tssr82114	transcription start site region 82114	476 bp upstream
Tssr82115	transcription start site region 82115	450 bp upstream