rs33376187 SNP Detail

Summary

• ID
  rs33376187
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100600180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAACCAA GCCACACTGC
  TGGCTCTATG CTGTCCCCAG CATCACGGTG GATGAAGTGG AAACATCAAA ACACTAACAT
  TAGACCTGAT CCTAGAACCG AAGGCTAGGA GGCAAGAGGA GGCAACATTA CTAAGTTTGG
  AGAGGTAAGC ATAGCAGGAG AGGGAAAAAG TATGCTAACA CAAACCAGAA AAAAGCAAAT
  W
  GAAATACCCT CTTAAAAGGG AGTGTAACAG TTAGGTTCTA AATGCACGAA AATATCTAAC
  ACTGAGAAAT AATATTAGGG GTGGACTGGA AGGGGAATAA AATCTGGAGC TTAAAATAAA
  TAAATAAATA ATAAAAAGAA AAAGAAATAA TATACGACAC TCAGAACGTG AGTGTCCTCC
  AAATGAAATT AACTATGAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46805957	NES10726995	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33376187					SNP	A	T	A	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46805957	NES10726995	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100600180 () rs orientation: forward

Symbol	Name	Function Class
Gm43464	predicted gene 43464	within coordinates
Rr581888	regulatory region 581888	1220 bp distal
Rr581889	regulatory region 581889	613 bp distal
Rr581890	regulatory region 581890	791 bp distal
Rr581891	regulatory region 581891	6 bp distal
Rr581892	regulatory region 581892	966 bp proximal
Tssr30881	transcription start site region 30881	394 bp downstream