rs33376190 SNP Detail

Summary

• ID
  rs33376190
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100600336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGGGAA AAAGTATGCT
  AACACAAACC AGAAAAAAGC AAATAGAAAT ACCCTCTTAA AAGGGAGTGT AACAGTTAGG
  TTCTAAATGC ACGAAAATAT CTAACACTGA GAAATAATAT TAGGGGTGGA CTGGAAGGGG
  AATAAAATCT GGAGCTTAAA ATAAATAAAT AAATAATAAA AAGAAAAAGA AATAATATAC
  S
  ACACTCAGAA CGTGAGTGTC CTCCAAATGA AATTAACTAT GAACTAAAAG AGATGTTTAA
  AGATTTATTA ATCTTATTTT GTTTGCTTGT TTGTTTATTA AGACGGGGTC TCTCTAGGTT
  TCTCTTGGCC AGCCTAGAAC TCAGTGCACA TATCAGGCTA GCCTGAACGT GTAAGGACCT
  GCATGTCTCT CCCTCCACAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss46805960	NES10726996	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs33376190					SNP	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46805960	NES10726996	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100600336 () rs orientation: forward

Symbol	Name	Function Class
Gm43464	predicted gene 43464	within coordinates
Rr581888	regulatory region 581888	1376 bp distal
Rr581889	regulatory region 581889	769 bp distal
Rr581890	regulatory region 581890	947 bp distal
Rr581891	regulatory region 581891	162 bp distal
Rr581892	regulatory region 581892	810 bp proximal
Tssr30881	transcription start site region 30881	550 bp downstream