rs33376600 SNP Detail

Summary

• ID
  rs33376600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31343095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTACA TTGTAATCTT GGCCCTGCTT
  Y
  CAATAAACCT TTATTTATTA AAGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39529049	mCV22897525	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		T
ss60562272	NES16490745	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	C	C		C		C	C		C	C	T	C		C
ss145456792	ENSMUSSNP4898529	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
ss325358775	CHEV_17_31261066	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33376600					SNP	T	T	C	C	T	C	C	C	C	T	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60562272	NES16490745	PERLEGEN	MM_PANEL	f	SNP	C/T
ss159840440	UOL_MMUSEQ_9001	UOL_CGR	Mmu17_30637692_36837814	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31343095 () rs orientation: forward

Symbol	Name	Function Class
Rr330604	regulatory region 330604	1495 bp distal
Rr334775	regulatory region 334775	1106 bp proximal
Rr341219	regulatory region 341219	1695 bp distal
Tff3	trefoil factor 3, intestinal	1185 bp downstream