rs33376802 SNP Detail

Summary

• ID
  rs33376802
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132354899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCACAGC CTGGAGCACC
  TCTGGGTCCG TTCAGTGGGA GCGTCTCCAG GAGAGCCCCT CCCTCCCGGG ACTCACTTGA
  AGATGAGCAA ACAGCACCAA GCCAGTGAAA ACTGCTTCCA CGGCTCTGAA GGGAGAGGAG
  AGGGGATTCC TTGTGCATGG CTTACATCCC CCGTGGGCAG CCATTCTAAA GCACTTGCTT
  R
  GACGTGGATA ACTCACAGGC ACTTCAGGGA TGGGATGGAG GACATAAACT GGTGGGGTCA
  CTTTGGCCTT TACCAGTGAA GTGGAGGCTG CAATTTCATA GCCAGACATC TTGACATGGG
  AACCCGAGGG GAAGGGGGAA TCGTCCTCAG CGCAGCAAAG CTGAATGGAA CCCAGCTGTA
  CGTTAACGGG AGACATAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45271408	mCV22302777	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss147620860	ENSMUSSNP1372807	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33376802					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132354899 () rs orientation: forward

Symbol	Name	Function Class
1700026D11Rik	RIKEN cDNA 1700026D11 gene	within coordinates
Gm74612	predicted gene, 74612	475 bp upstream
Rr367319	regulatory region 367319	94 bp downstream
Rr367320	regulatory region 367320	1025 bp upstream
Rr565480	regulatory region 565480	486 bp distal
Rr565481	regulatory region 565481	within coordinates
Rr565482	regulatory region 565482	108 bp proximal
Tssr26474	transcription start site region 26474	470 bp upstream
Tssr26475	transcription start site region 26475	923 bp downstream