rs33377100 SNP Detail

Summary

• ID
  rs33377100
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125568854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAAGGAGA AAGAATGAGA
  GGAGAGGAGG AAGCCACCAT GAAGGGAGAT GGATCATGAG CATGTGACCA GGAGAAACAG
  CAAGTATCTG AGGTGCACCA CTGGGGAGGT AGCCAGGCCA GCACTTAGAA GAGCAGATTA
  GGAGTAACTC CCAGTAATTG TCAAAGCCGA ATAAAACAAC CACAGTCTGA GTCTCACTCA
  W
  TTGTAAGCTA GTCCAGGATA CGTTTAAACT GGTTGTACTA AAGTAAAGGA AAGTAAGTTG
  TGCAGCCTGA CTCCAGCTGG TGAGTGATGA TGGCGCCGGA CATACGGCTG CCAGACCCAC
  TGCCACCTGA TGATCAGAAA CCCCACATCT AGATGCTGGC CCTTGTTGAG ACTGCAGGCT
  CATTGCTCCC TGGTGGTGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45271136	mCV22613612	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss147486097	ENSMUSSNP4049945	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss320497845	CHEV_2_125552670	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs33377100					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125568854 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr70	DNA Segment, Chr 2, Derry C. Roopenian 70	1199 bp distal
D2Mit398	DNA segment, Chr 2, Massachusetts Institute of Technology 398	1196 bp distal
Rr564272	regulatory region 564272	1615 bp distal