rs33377744 SNP Detail

Summary

• ID
  rs33377744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100602117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTGGTTT CCAGATGCAA
  TGTCATTTAA GGAAGAAAAT GAAATAGTCA CTTTCATTCC TAACACCTAA GAGAGTGTAT
  GGATCACAGA CTTACATCAA AAGAACTGTT AAAGTAAAGC CAACCAACCC AAAAGAAACA
  AAATAAGACA ACACAAAGCA AAACCGTTAG GGAGAAAGCT TAAGATAGAC GAGGTACTGA
  Y
  GAGGGAAGAG ATGGATAAAG TGAACGGTAG AAAGGAGTCA TTCCGACGTC TGTGCTTTTG
  GTTTTGTACT TTTAAGTACA TGAAAACACT GGGGATGTTA TCCCAGCACT CTGTGACCAA
  AGCTAAGCCT GACTCAAAAA ACAAAACAAA ACAAAACAAA GTGAATGCAT GAGGGCAAAT
  GTAAAACAGA GAGTTGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46805975	NES10726904	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33377744					SNP	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46805975	NES10726904	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100602117 () rs orientation: forward

Symbol	Name	Function Class
Gm43464	predicted gene 43464	within coordinates
Rr581891	regulatory region 581891	1943 bp distal
Rr581892	regulatory region 581892	950 bp distal