rs33378054 SNP Detail

Summary

• ID
  rs33378054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:76345300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGACTCA AATAGTATGG
  AAAGGCAAAG AGCATTTAGT CCGCAGAAAT AACCAACATG GAAAGACCAA CCATTCATCA
  AAACGGCCAT GCCTTGGGGG CTGGCAGGAC CCTTTTTATG AAGGGTTAGG GGAATTTTCC
  AGAAGGGTTA GGTAACTTCT AATATCATTG GTAGGTGGGC AAAGCAGTGC CATGAGTACA
  R
  CTTTGATGGG CTGCTATGTT AGTTCTATTA TATCTGGTGA GACCTTGAAG AATCTCAGTT
  TGGGCTTTGA TATCTCCTCC AGCTAGGTGT CCCAGGACCT GACTCAGCTC CAGACTTCTC
  CTCCCTGAGT CAGGGCTGTC ACTGACTAAA GTCCCATTGT CAGTGGCTCC TTCTGAGGAA
  CCCAGTATGC TTCCTGGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48305220	NES12209732	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33378054					SNP	G	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48305220	NES12209732	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:76345300 () rs orientation: forward

Symbol	Name	Function Class
Gm30726	predicted gene, 30726	383 bp upstream
Rr370111	regulatory region 370111	1204 bp upstream
Rr518205	regulatory region 518205	1247 bp proximal
Tssr139022	transcription start site region 139022	331 bp upstream