rs33378057 SNP Detail

Summary

• ID
  rs33378057
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:76344903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCCTTGG TGAACTGCAT
  ACCAGGGAAA CACTTCGATT GCTGGACTGG CTTCAAAGAA ATTGAGAAAC TACCTTTGAA
  AAATGGAGCT GTAACTCATT GGGGAATATG ATCAAAGTCA GCATGGAAGC CCCACCCCTC
  CACCCCATAT GCACTCCCTT TTCCTATCTG TAAAAAGAGT TAAGTTGCGC GTGATCTAGT
  Y
  GCCACGTTTA AGATTTTCAA ACCTGTAGGA TCGAAACCGT CATTTCCACC TCATTAGGAA
  GGCATCCATT TTTCTCTCAG CTTTCTGGAC AGAAAATAGT GAGATTGTAG CAGGTGTTTT
  TCTTTATAGT AATTAACTTA TTGTTGCTTC TGTGGAGAAT TAAAGAATTA GGGTCCAAGG
  ATAGCTGAAG GAAAACCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48305223	NES12209828	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33378057					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48305223	NES12209828	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:76344903 () rs orientation: forward

Symbol	Name	Function Class
Gm30726	predicted gene, 30726	780 bp upstream
Rr370111	regulatory region 370111	1601 bp upstream
Rr518205	regulatory region 518205	1644 bp proximal
Tssr139022	transcription start site region 139022	728 bp upstream