rs33378189 SNP Detail

Summary

• ID
  rs33378189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75931671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAGAAAAAT AACAGTTATG AAGTAGCAAC AAAATAATTT
  AATGGTTGGG GGTCCCCACG ACTTGAGGAA CTGTACCAAA GGGTCGCAGC ATTAGGAAGG
  Y
  TGAGAGCCAC TGCTCCAGGA TCAACTACGA GGCTGGCTGC TATAAGCTTA GGTCCCTTCT
  GCAATGCTGT CTCAACTTTT TGTTACACTA AGACCTAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45271149	mCV23800059	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss146770250	ENSMUSSNP2353757	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320352655	CHEV_2_75939384	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33378189					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75931671 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559649	regulatory region 559649	887 bp distal
Rr559650	regulatory region 559650	564 bp proximal