rs33378487 SNP Detail

Summary

• ID
  rs33378487
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71151170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG GCCTGGGTTT ATGAGGCTCC
  R
  CACATCACGC CACAGAAGTG CCAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46268552	mCV22788495	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss145129777	ENSMUSSNP148705	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss322701107	CHEV_8_73222419	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33378487					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71151170 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20486	CpG island 20486	1509 bp distal
Gm11175	predicted gene 11175	641 bp downstream
Gm64347	predicted gene, 64347	within coordinates
Gm64349	predicted gene, 64349	within coordinates
Jund	jun D proto-oncogene	429 bp upstream
Rr368549	regulatory region 368549	115 bp downstream
Rr368550	regulatory region 368550	139 bp upstream
Rr664888	regulatory region 664888	1518 bp distal
Rr664889	regulatory region 664889	17 bp distal
Rr664890	regulatory region 664890	within coordinates
Rr664891	regulatory region 664891	138 bp proximal
Rr664892	regulatory region 664892	283 bp proximal
Rr664893	regulatory region 664893	1158 bp proximal
Tssr77799	transcription start site region 77799	6 bp upstream
Tssr77800	transcription start site region 77800	411 bp upstream
Tssr81647	transcription start site region 81647	193 bp upstream
Tssr81648	transcription start site region 81648	156 bp upstream