rs33378920 SNP Detail

Summary

• ID
  rs33378920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46036729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTATTATTT TTATTGTTAT TACAGAAGGC CAGGCCAGGC
  AAGTCTAAGA CTCCCAACTT ACTCAGGGGC ATTGATCTCT TTCTGATGTT TCCTGACCCC
  Y
  TCTGTGTTCC TGGGATCAAG ATTAGTGGGG GTTGAGTGAC AGGCCACTCA ATGGTTAAAG
  TCCAGGTCAG TTTAGACTTG AGTTCAAGCC CCAGGACCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
ss39528511	mCV24294642	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss145695424	ENSMUSSNP5940878	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325403921	CHEV_17_45862752	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
rs33378920					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46036729 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9206	CpG island 9206	1363 bp distal
Gm35456	predicted gene, 35456	within coordinates
Rr331486	regulatory region 331486	929 bp distal
Rr331487	regulatory region 331487	1072 bp proximal
Rr339880	regulatory region 339880	1128 bp distal
Rr339881	regulatory region 339881	271 bp proximal