rs33378977 SNP Detail

Summary

• ID
  rs33378977
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:103572819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCGGAAAG TTCTGGGTCT GAAGTTGGGG GAGCCCAAGA
  GGCTTCATCC CCAAGTCTGC ACAGTGGAGA GTGCACACAG CAGAACCCTG CCCTGGCGCC
  M
  TCGACCCCAG CGCGGGGCCA AAAGAAGAGT GAGGAGCCCG ACCCAAGGCA CCGGTTGTCA
  TGGCAACCGG GGCGCAGGTC TCCCCAGAGA CTCGGTCCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45771525	mCV24430830	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss148945506	ENSMUSSNP3799222	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs33378977					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:103572819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16135	CpG island 16135	within coordinates
Ptpn13	protein tyrosine phosphatase, non-receptor type 13	239 bp upstream
Tssr47557	transcription start site region 47557	228 bp upstream
Tssr47558	transcription start site region 47558	249 bp upstream
Tssr47559	transcription start site region 47559	280 bp upstream
Tssr52160	transcription start site region 52160	767 bp downstream
Tssr52161	transcription start site region 52161	795 bp downstream