rs33379009 SNP Detail

Summary

• ID
  rs33379009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:76344154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAAAACA TTTGTTTTGA
  AATACAATAT GGAGTAACTT ACGTAGCCTG ATCGCTATAC CTGAGGACAT TGGTGCCAAA
  TGTCTGGTTT TCCAGGAAGC TCTGGGGTCA AAAGAGTGAA CTCTGGGACA GCTGTAGTGA
  AAGTGTTCTC CCTTGATCAC TCTATGAGCA CTGCAGTCTG GTCCTGCAGG AATTCTGCCA
  Y
  TTATGGTTCA AAACACCATT TCTAGAATGA ACTCTGGAAT CACTGGGATC AAAGCCAGTC
  ATCTGGGGGC ATTTTATAAC CACTGGGTCC TATTCCTTGT GCTGGACAGA ACTCTGAAGC
  CAGAGAGTAA CAGCCTACGT TCTACTGTGA ACTTGAAACC TGTAGGTTCC GGATGAACTA
  TGGGCCCACT TAAATAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48305237	NES12209805	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33379009					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48305237	NES12209805	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:76344154 () rs orientation: forward

Symbol	Name	Function Class
Gm30726	predicted gene, 30726	1529 bp upstream
Tssr139022	transcription start site region 139022	1477 bp upstream