rs33380344 SNP Detail

Summary

• ID
  rs33380344
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114858426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGT ATTACACTGC TCAGATAACG
  Y
  GATAAACCAC AGGTGCTGGG TTAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss46269208	mCV24161352	ABI	CRAMUS_MOUSE	f	SNP	T	C					C
ss51975816	NES14994028	PERLEGEN	MM_PANEL2	f	SNP		C	C	T	T	C	C	C	C	C	C
ss145783791	ENSMUSSNP4090639	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs33380344					SNP	T	C	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51975816	NES14994028	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114858426 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21082	CpG island 21082	1764 bp proximal
Gm56821	predicted gene, 56821	within coordinates
Nudt7	nudix hydrolase 7	1888 bp upstream
Rr401147	regulatory region 401147	1723 bp upstream
Rr670351	regulatory region 670351	695 bp distal
Rr670352	regulatory region 670352	200 bp distal
Rr670353	regulatory region 670353	1224 bp proximal
Rr670354	regulatory region 670354	1967 bp proximal
Tssr79531	transcription start site region 79531	1883 bp upstream
Tssr79532	transcription start site region 79532	1915 bp upstream
Tssr79533	transcription start site region 79533	1949 bp upstream
Tssr83006	transcription start site region 83006	676 bp upstream
Tssr83007	transcription start site region 83007	91 bp upstream
Tssr83008	transcription start site region 83008	82 bp upstream