rs33380394 SNP Detail

Summary

• ID
  rs33380394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:41342127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAC ACTTCCAGTG TGTGCATGGA
  R
  AAGAAGGACC AGAACTCCAG AAGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46269309	mCV24417222	ABI	CRAMUS_MOUSE	f	SNP		G	G					A
ss60601034	NES16305925	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		A	G	G	G		A	G	G	A		G
ss144674458	ENSMUSSNP5089433	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss322633463	CHEV_8_41974444	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33380394					SNP	G	G	G	G	G	G	G	A	A	G	G	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60601034	NES16305925	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41342127 () rs orientation: forward

Symbol	Name	Function Class
Rr662620	regulatory region 662620	1699 bp distal
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	within coordinates
Tssr76995	transcription start site region 76995	1227 bp downstream
Tssr76996	transcription start site region 76996	1171 bp downstream
Tssr76997	transcription start site region 76997	1057 bp downstream
Tssr76998	transcription start site region 76998	678 bp downstream
Tssr76999	transcription start site region 76999	435 bp upstream
Tssr77000	transcription start site region 77000	1236 bp upstream
Tssr77001	transcription start site region 77001	1375 bp upstream
Tssr77002	transcription start site region 77002	1395 bp upstream
Tssr77003	transcription start site region 77003	1516 bp upstream
Tssr77004	transcription start site region 77004	1590 bp upstream
Tssr77005	transcription start site region 77005	1614 bp upstream
Tssr77006	transcription start site region 77006	1649 bp upstream
Tssr81068	transcription start site region 81068	1986 bp upstream