rs33380825 SNP Detail

Summary

• ID
  rs33380825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:7833148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGAAATGAG CCGGGCGTGG
  TGGCGCACAC CTTTAAACCC AGCACTCAGG AGGCAGAGGC AGGCGCATTT CTGAATTTGA
  GGCCAGCCTG GTCTACAAAG TGAGTTCCAG GACAGCCAGG GCTATACAGA GAAACCCCGT
  CTCACAAAAA AAAAGGTTAG AAATGGGTTT TGGGGGACAT GGTAAAATGC GAGAGAGTAT
  Y
  TTTTTTTCCT GGGCAGCATG GGTTGAGGAG CAGAGGGACC TGGACAGACA GGACTATGGC
  TGTTATCCAG AGACAAATTC TGGGAACACG GAAAGAGCGG AGAAGTCAAG CCAAGAGATG
  GGGTGGAGAA AGTGTGGAAA GAATGGGGTT CAGTGGGCAG TCAACCCTAG GGCTGACGGG
  CATGGGGGAC ATTGGGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46806685	NES10980159	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33380825					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46806685	NES10980159	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7833148 () rs orientation: forward

Symbol	Name	Function Class
Gata1	GATA binding protein 1	Intron
Gm14820	predicted gene 14820	within coordinates
Gm39488	predicted gene, 39488	within coordinates
Gm52419	predicted gene, 52419	within coordinates
Rr689702	regulatory region 689702	550 bp distal
Rr689703	regulatory region 689703	395 bp distal
Rr689704	regulatory region 689704	538 bp proximal
Rr689705	regulatory region 689705	991 bp proximal
Rr689706	regulatory region 689706	1072 bp proximal
Tssr160483	transcription start site region 160483	543 bp downstream
Tssr162833	transcription start site region 162833	893 bp downstream
Tssr162834	transcription start site region 162834	908 bp downstream