rs33380827 SNP Detail

Summary

• ID
  rs33380827
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:7833588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACATTTTG GCCAACAGGT
  AGGGGGAAGG GAAAAGTTTG GGAAGGTCAG AGAGAAGACG CAGGGAACAA GCATGCGGTC
  TGACAGGCCA CGATGGGGAT GGGAATTAAA GTTAGGCTTT GACACATCAG AGACAGGTGT
  GATCGGCCAG AAAAAAATGG GATAGAAACA GAGGTATTCA CTTGAGAGCA GAAATACGAG
  W
  CTTGAGGAAG CGAAAGTGAG TTTTGTTTTG TTTGGTTTTT TTTGTTTGGT TTTCCTTTTT
  TTGGGAGAAG AGAGAGGTGG AGACAAGTTT CAATCAGTAA AAATTCCGAT TTGAGATGAG
  ATAGGAGCGT GGGGGAATGA AGGCATAGGG TTTCTCGGGG GTTGGTATGT ATAGCAGGCA
  GGCCTGGGAG GATGAAGACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46806688	NES10980162	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33380827					SNP	T	T	T	T	T	T	A	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46806688	NES10980162	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7833588 () rs orientation: forward

Symbol	Name	Function Class
Gata1	GATA binding protein 1	Intron
Gm14820	predicted gene 14820	within coordinates
Gm39488	predicted gene, 39488	within coordinates
Gm52419	predicted gene, 52419	within coordinates
Rr689702	regulatory region 689702	990 bp distal
Rr689703	regulatory region 689703	835 bp distal
Rr689704	regulatory region 689704	98 bp proximal
Rr689705	regulatory region 689705	551 bp proximal
Rr689706	regulatory region 689706	632 bp proximal
Tssr160483	transcription start site region 160483	983 bp downstream
Tssr162833	transcription start site region 162833	453 bp downstream
Tssr162834	transcription start site region 162834	468 bp downstream