rs33381512 SNP Detail

Summary

• ID
  rs33381512
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:76168258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGAGAAG TGTCCCCAGT
  AGAGTTATTA TAAAACAGGC TGGAGTAAGT ATCTGGTTTG CAGGTACTGC CTGCTACAAT
  TCTGACTCTC CTTCTTTGTC TACAGTAACT AAGTCCTGTA CAGAAATTTC CTGTTGGTTT
  TGAAGTCCCT GAATCAATTA AACCCTGTTG GATATTACCA AACTGCTGGG CAAAACCAGG
  R
  CAACTCACTT GGAAGTGGAA GATTTCAACA TACTCCAGAC AGCAGCCACT CTTAGGGGCC
  GTGCATAGGA AGCACCGTTT GTTTAAAAAG TCGACTTATT TCACTCTTAG ACAAAGGTGG
  CAACCTGATG ATTAAACACT GGATAATTGC ATCTGGAAGA TGCCGCCCAC TTGCTAAACC
  TGTGATTCAC TAATAAGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48305641	NES12206262	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33381512					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48305641	NES12206262	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:76168258 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8372	CpG island 8372	635 bp proximal
Nrip1	nuclear receptor interacting protein 1	within coordinates
Rr325475	regulatory region 325475	within coordinates
Tssr139017	transcription start site region 139017	1727 bp upstream
Tssr139018	transcription start site region 139018	1823 bp upstream
Tssr141820	transcription start site region 141820	1644 bp downstream