rs33382006 SNP Detail

Summary

• ID
  rs33382006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:7835419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGAGAAG GAGAGAGATT
  TAGAGGCAGA GTCTGAGGGA GTGAGCTGTA TGTGTTTATG TGTGTACGTG TGTGTGTGCA
  TGCCATGCTA GTGCCATTGG TGTGAGGATG TGGCTGTTGT GATCTGTGTG GCTCTGCTCA
  GCTGTATTGA AGTGATACCC TTCCAGCCCT AGTCACTGGA TGCTGACAGT CCATCCCTAC
  Y
  TTTTTCTTTT GGCCCACTGG TGCCTTGTTC TCACATAAAC CTTCACCAGT AGATTTTGAG
  CGCTGCTTCT GCATCACACA CGGCACTGCA CTTGCATCCT CATTCATAAG ACTTTCTGAC
  ATGGCCCTGG AAATCCGTAG GCTAGGCCTC GCCTACTAAC CGTCCATTCT ACAGTTGGGG
  AGACTGAGAA CCACTGAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46806700	NES10980103	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33382006					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46806700	NES10980103	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7835419 () rs orientation: forward

Symbol	Name	Function Class
Gata1	GATA binding protein 1	Intron
Gm14820	predicted gene 14820	within coordinates
Gm39488	predicted gene, 39488	within coordinates
Gm52419	predicted gene, 52419	within coordinates
Rr689704	regulatory region 689704	1281 bp distal
Rr689705	regulatory region 689705	780 bp distal
Rr689706	regulatory region 689706	1175 bp distal
Rr689707	regulatory region 689707	1774 bp proximal
Tssr162833	transcription start site region 162833	1368 bp upstream
Tssr162834	transcription start site region 162834	1305 bp upstream