rs33382282 SNP Detail

Summary

• ID
  rs33382282
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100676583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACCACTG AGCCACTCTC
  CAAGCTCCCA TCCTCTCCCT TTCATTTATA AACAATCTCT TTCTCTTTCT CTGTCTCTCT
  CTGTCTCTGT CTCTCTGTCT CTGTCTCTCT TTCTCTTTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCACACACA CACACACACA CACAAATAAC CATACTAAAC
  Y
  CAAATCATAC TAAATCAGGC CATGGCCCTG AACGTGCCTA GAGGAGCTTC AGCTGTTAGA
  ATGTCGCTTT CCTCTGCTGA CCACCCTAGG AATTTGCCGG TTATGCTCAC AACAGCTGGC
  TACATTTTCT ACCCTCAAGC AGAGTTCAGG CTCCAGGGTT GGGTTTCTAT AGGAGGAGCT
  TTTCTTCTCA TCAGACTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46806896	NES10722847	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33382282					SNP	C	C	C	C	C	T	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46806896	NES10722847	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100676583 () rs orientation: forward

Symbol	Name	Function Class
Rr581901	regulatory region 581901	549 bp distal
Rr581902	regulatory region 581902	1029 bp distal
Rr581903	regulatory region 581903	1994 bp proximal