rs33383972 SNP Detail

Summary

• ID
  rs33383972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100677656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGAACAA CTAAGATTGC
  TTTAAAATTT GACATACAAT ATGCTCTTTC TTTCTCTTTC TCTTTCTCTT TGGTCTGATT
  TTATATTAGA GCTATCTTAG CACTTACACA CATGCAGGCA AAACACTCAT ACACATAAAA
  ATAAATAAAT AAATCTTTTA TAAAGCTTGG ATCTTGGACA TGGTTTCAGT GCTGGCTGTC
  R
  CATTGTCCTC ATCAGCATGT CACCTGCTAT CTGTATTGTT CGCTTTCTTC TTTTCTCAAA
  TCAATGGGTG GTTCCACCTT TTTCTTCAAT AAGTTAGCAA ATGCAGAGCT ATCAGGTTTT
  GTGCTTGCTG CTTGAACTCA GATGCACTGG GAAGGTTGCT GTCTGCTGGA GTGTTCTCTT
  TCCACATATT CTTCAGAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46806953	NES10722808	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33383972					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46806953	NES10722808	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100677656 () rs orientation: forward

Symbol	Name	Function Class
Rr581901	regulatory region 581901	1622 bp distal
Rr581903	regulatory region 581903	921 bp proximal