rs33384009 SNP Detail

Summary

• ID
  rs33384009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100676854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGCTGA CCACCCTAGG
  AATTTGCCGG TTATGCTCAC AACAGCTGGC TACATTTTCT ACCCTCAAGC AGAGTTCAGG
  CTCCAGGGTT GGGTTTCTAT AGGAGGAGCT TTTCTTCTCA TCAGACTATT TCGCAGATTC
  AAGTTTTCCT ATAACCTTTC TTGGGCCAAG AATGCATGGT CCTTGTTCCC AGCTGACTGG
  R
  ACACCTGTCA AGGTCCTAAT TCTTTGCAAT GACCTTAGTC ATTGCCTCCT ATACAATGTA
  GATTTCAAAC CATGTGTATC TTACCTCCCC AAAGACAGAA AATGCTGAGT TTGAGCCATA
  GAGCCAGCAG GTCTGATACT CCTACCCCAA GTCCTTGCTT GCCACCCTCG TAGCTCCCGT
  TTCTTCCTTC GGAGGCCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46806914	NES10722854	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33384009					SNP	A	A	A	A	A	A	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46806914	NES10722854	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100676854 () rs orientation: forward

Symbol	Name	Function Class
Rr581901	regulatory region 581901	820 bp distal
Rr581902	regulatory region 581902	1300 bp distal
Rr581903	regulatory region 581903	1723 bp proximal