rs33384012 SNP Detail

Summary

• ID
  rs33384012
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100676961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTTCTTC TCATCAGACT
  ATTTCGCAGA TTCAAGTTTT CCTATAACCT TTCTTGGGCC AAGAATGCAT GGTCCTTGTT
  CCCAGCTGAC TGGAACACCT GTCAAGGTCC TAATTCTTTG CAATGACCTT AGTCATTGCC
  TCCTATACAA TGTAGATTTC AAACCATGTG TATCTTACCT CCCCAAAGAC AGAAAATGCT
  R
  AGTTTGAGCC ATAGAGCCAG CAGGTCTGAT ACTCCTACCC CAAGTCCTTG CTTGCCACCC
  TCGTAGCTCC CGTTTCTTCC TTCGGAGGCC AGCTATTCTA TTCGTTGTTC ATATTGTATA
  TCACCTATCA TTTCTCCATC TTGACTGAGG CCAGAGGTGC CAAGTTGACA GAGGAACTCA
  AACAAAAAGA AATTGCATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46806917	NES10722856	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33384012					SNP	G	G	G	G	G	G	A	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46806917	NES10722856	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100676961 () rs orientation: forward

Symbol	Name	Function Class
Rr581901	regulatory region 581901	927 bp distal
Rr581902	regulatory region 581902	1407 bp distal
Rr581903	regulatory region 581903	1616 bp proximal