rs33384775 SNP Detail

Summary

• ID
  rs33384775
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100677004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAACCTTTC TTGGGCCAAG
  AATGCATGGT CCTTGTTCCC AGCTGACTGG AACACCTGTC AAGGTCCTAA TTCTTTGCAA
  TGACCTTAGT CATTGCCTCC TATACAATGT AGATTTCAAA CCATGTGTAT CTTACCTCCC
  CAAAGACAGA AAATGCTGAG TTTGAGCCAT AGAGCCAGCA GGTCTGATAC TCCTACCCCA
  R
  GTCCTTGCTT GCCACCCTCG TAGCTCCCGT TTCTTCCTTC GGAGGCCAGC TATTCTATTC
  GTTGTTCATA TTGTATATCA CCTATCATTT CTCCATCTTG ACTGAGGCCA GAGGTGCCAA
  GTTGACAGAG GAACTCAAAC AAAAAGAAAT TGCATTGTTT TGGTTGGGTT TTTGCAAGGC
  TCGGGATCAG ACCCAGAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46806920	NES10722858	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33384775					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46806920	NES10722858	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100677004 () rs orientation: forward

Symbol	Name	Function Class
Rr581901	regulatory region 581901	970 bp distal
Rr581902	regulatory region 581902	1450 bp distal
Rr581903	regulatory region 581903	1573 bp proximal